Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINQVYRLVSE-RQFEEANIEEA-LTEDVVVVRPTYLSICAADQRYYTGSRGKEMLSKKLPMALIHEGVGQVTYDATG--EFEIGTKVVMIPN-TPTE---DDPVIAENYRRSSLFR-------SSGYDGLMQENVFMRRDRVVRLPENMDMEVAA-YSELISVAFHAITRFKQKANANQSVFGVWGDGNLGFITCLLLKTIYPESKVIIFGKTQYK-LDFF-S-FVDEAHLVDEI----PEGLVIDNAFECAGGKGSQYAVEQIIDLIKPEGTISLLGVSENPIEFNSRMVLEKGLTVFGSSRSGKEDFQNTVNFLSENERAVEYLSSLIGQRKVVRNLQDIIEAFETDLRNP-FGKTVMEWKV |
| 2CF5 Chain:A ((8-351)) | RKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM----SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGL--KQPGLRGGILGLGGVGHMGVKIAKA-MG-HHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPV---HHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCK-EK----GLSSII-EVVK---MDYVNTAFERLEKNDVRYRFVVDVE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CF5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157087 for 2692 contacts (-58.4/contact) +
2D Compatibility (PS) -33915 + (NN) -5935 + (LL) 1716
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -207821.0 ( -77.20 by residue)
QMean score : 0.395
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