Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKININVILILLVVLLMVSPFFFNKTGEYGGSDGEAEAEITKIDPSYEPWFEPLYEPKSGEIESLLFTLQGCIGTGIIAYVIGVSRGKRKAENDVNH
2QMD Chain:A ((101-164))
------NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLV--KQTHVPN-LFSLQLC-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7249 for 285 contacts (-25.4/contact) +
2D Compatibility (PS) -6879 + (NN) -1701 + (LL) 2152
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -18027.0 ( -63.25 by residue)
QMean score : 0.061
(partial model without unconserved sides chains):
PDB file :
Tito_2QMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QMD-query.scw
PDB file :
Tito_Scwrl_2QMD.pdb
: