Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGIIPLWKERGMTSHDCVYKLRKILHTKKVGHTGTLDPEVEGVLPICIGRATKLAEYVTDEGKVYVAEITLGKSTTTEDATGETVNTKELAEISAAELQAALTKLTGKITQIPPMFSAVKVNGKKLYEYARAGIEVERPSRQVDIYSLIRLDGDTALNQSNPTFQLEIACGKGTYIRTLAVMIGELLGYPAHMSKLERTRSGFFKKE-DCLTLTEIDEMMQA-------SD-SSFLYPLEKGIESMAKLVIEEEVYAKVLNGGLLPTSLFAEV-----ENEPRAALIFKDKLTAIYKPHPEKKDLWKPEKVIELNQA |
| 3U28 Chain:A ((58-318)) | SSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDAL-----------------KDEKDLGRSLENLTGALFQRPP-----KRQ-----------------LRVRTIYESNLIEFDN----KRNLGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIA------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151880 for 1877 contacts (-80.9/contact) +
2D Compatibility (PS) -25692 + (NN) -10298 + (LL) 4620
1D Compatibility (HY) -12800 + (ID) 3800
Total energy: -199850.0 ( -106.47 by residue)
QMean score : 0.537
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