Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP--NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSD------GKTPVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEANKRFDAAK
2CDY Chain:C ((21-231))
LAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEG-TEFADLPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK
General information:
TITO was launched using:
RESULT:
Template:
2CDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69760 for 1617 contacts (-43.1/contact) +
2D Compatibility (PS) -20958 + (NN) -5370 + (LL) 44
1D Compatibility (HY) -21600 + (ID) 6150
Total energy: -123794.0 ( -76.56 by residue)
QMean score : 0.725
(partial model without unconserved sides chains):
PDB file :
Tito_2CDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDY-query.scw
PDB file :
Tito_Scwrl_2CDY.pdb
: