Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNS----------------VIRVGITDTKTTVISYLTDIGGVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQRPRPTYKLIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRSWLRFTIGILALGIVIFVMYSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNEKLALWANKFKKA----------------- |
| 3GAA Chain:A ((4-246)) | MIMVNKKASESQVMELEKRNYNNPVVLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFVGGKLRHPFRIYANNSNTVLV-AMCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANG---IPEERPVFAVAEKPKLDKFKKAGIQPADSAIIA-----GMGGGILNECLVR------------KITGLSFITPTSV--DIPDPGAVLSIIEAINKAYNLK---IKTDLLEEQVKALDEQIKKIEEQYKELQEKQKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GAA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -229284 for 1603 contacts (-143.0/contact) +
2D Compatibility (PS) -21373 + (NN) -10592 + (LL) 2180
1D Compatibility (HY) 800 + (ID) 950
Total energy: -259219.0 ( -161.71 by residue)
QMean score : 0.297
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