Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQWTVKEMAAYVGISADTLRYYEKNKIIVPN-RLENGYRVYNTEHLLELKFILVMKYARFSLSEIKLMMEWLRSEPSVACNTASKELLALKAAEIKQTIAHYTKIAALLEELPQIDEVQDYSTVQKDVNTFVEHIFTDIRKDGF
3GP4 Chain:A ((2-120))
--SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHT--LEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP----------------------
General information:
TITO was launched using:
RESULT:
Template:
3GP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46592 for 716 contacts (-65.1/contact) +
2D Compatibility (PS) -13344 + (NN) -11945 + (LL) 2064
1D Compatibility (HY) -3600 + (ID) 1600
Total energy: -75017.0 ( -104.77 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3GP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP4-query.scw
PDB file :
Tito_Scwrl_3GP4.pdb
: