Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQGKNILLAVSGGIAVYKAVALTSKLTQAGANVKVMMTAHAQEFVPPLSFQVLSKNDVYTDTFDEKKSSVVAHIDLADWADLVIVAPATANVIGKMANGIADDMVTTTILATEAPVWVAPAMNVHMIQHPAVIRNINRLYADGVRFIEPEEGYLACGYVGRGRLEEPEKIVLRIAEFFQEDKNLLQGKNVLVTAGATREKLDPVRYFTNHSTGKMGFSIAESAARHGANVTLITTSKALPVP--HGVEAIYVESAEEMHQAVNERKVSQDIFVMTAAVADYTPAQV--------------------SDQKIKKQPGDFTIAMKRTKDILLEIGQHKTSEQVVIGFAAETE----NVEANARKKLTSKNADMIVANNISEAGAGFSGDTNIVTFYRKDGSSEALPILDKKEVAEHIIKEAANFLRK |
| 2GK4 Chain:A ((3-231)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLVKEW-NPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLT----QISADQHRAIFVEKNQL---QTVQTKEEIAELLLEKIQAYH-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88604 for 1571 contacts (-56.4/contact) +
2D Compatibility (PS) -22132 + (NN) -7840 + (LL) 15784
1D Compatibility (HY) -12000 + (ID) 2950
Total energy: -117742.0 ( -74.95 by residue)
QMean score : 0.515
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