Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDHAEDAVIINKNE
4P83 Chain:B ((5-181))
---KAVIMDEQAIRRALTRIAHEIIERNKGIDGCVLVGIKTRGIYLARRLAERIEQIEGAPVPVGEIDITLY---------DD-EPLVKGTNVPFPVTERNVILVDDVLFTGRTVRAGMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELDEVDQ-NDQVSIHEN-
General information:
TITO was launched using:
RESULT:
Template:
4P83.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119137 for 1344 contacts (-88.6/contact) +
2D Compatibility (PS) -18668 + (NN) -7702 + (LL) 880
1D Compatibility (HY) -20000 + (ID) 5600
Total energy: -170227.0 ( -126.66 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_4P83.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P83-query.scw
PDB file :
Tito_Scwrl_4P83.pdb
: