Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVI--VACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLEQHI-----KTSDVYVAITKANKE----FDIPTLNGIAFLTGMGMDEETEKLLNALK
2R4Q Chain:A ((170-266))
-AKILAVTACPTG--HTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQVEMERFKGKRVLQVPVTAGIRRPQELIEKAM----
General information:
TITO was launched using:
RESULT:
Template:
2R4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11680 for 600 contacts (-19.5/contact) +
2D Compatibility (PS) -9217 + (NN) -2544 + (LL) 960
1D Compatibility (HY) 1200 + (ID) 600
Total energy: -21881.0 ( -36.47 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_2R4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R4Q-query.scw
PDB file :
Tito_Scwrl_2R4Q.pdb
: