Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHS--KNGY-YDGLIFHRVIPEFMIQGGDPDGR-GTGGESIWGESFEDE-FSTEAFNLRGALSMANAGPNTNGSQFFI-VQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVI---EKINIK
2RMC Chain:A ((22-172))
-----------------------GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGI-GWVSMANAGPDTNGSQFFITLTKP----------------------------TWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVK
General information:
TITO was launched using:
RESULT:
Template:
2RMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47786 for 1021 contacts (-46.8/contact) +
2D Compatibility (PS) -14984 + (NN) -7451 + (LL) 3720
1D Compatibility (HY) -16000 + (ID) 4150
Total energy: -86651.0 ( -84.87 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2RMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMC-query.scw
PDB file :
Tito_Scwrl_2RMC.pdb
: