Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHE-TTWLHEAAAGTIEPEKLMYPLDKVVNDTKTTFIQD-TVVKINKDEKTVTLDANGDISYDYLLIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVLEDRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVRGNSVIEA-SGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK |
1XHC Chain:A ((9-302)) | ---SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITE-KGEVPYDTLVLATGARAREPQIKGK-EYLLTLRTIFDADRIKESIE------------NSGEAIIIGGGFIGLELAGNLAEA-------------GYHVKLIHRGAMFL-GLDEELSNMIKDMLEETGVKFFLNSELLEAN-EEGVLTN---S-GFIEGKVKICAIGIVPNVDLARRSGIHTGRG-ILIDDNFRT-SAKDVYAIGDCAEYSG-----IIAGTAKAAMEQARVLADILKGE----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208555 for 2402 contacts (-86.8/contact) +
2D Compatibility (PS) -31294 + (NN) -14270 + (LL) 6076
1D Compatibility (HY) -16400 + (ID) 3750
Total energy: -268193.0 ( -111.65 by residue)
QMean score : 0.524
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