Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLD------WIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLS---GHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 1UF3 Chain:A ((3-225)) | ------------------------------------RTVRYILATSNPMGDLE--------------------------ALEKFVKLAPDTGADAIALIGNLMPKAAKS--RDYAAFFRILSEAHLPTAYVPGPQDAPIW--EYLREA-------AN---VELVHPEMRN-------VH-ETFTFWR-GPYLVAGVGGEIADEG-------EPEEHEALRYPAWVAEYRLKALWEL--KD-YPKIFLFHTMPYHKGL------NEQGSHEVAHLIKTHNPLLVLVAGKGQKHE----ML-----GASWVVVPGDLS--EGEYSLLDLRA--RKLETG------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UF3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74949 for 1836 contacts (-40.8/contact) +
2D Compatibility (PS) -23564 + (NN) -9480 + (LL) 10968
1D Compatibility (HY) -2800 + (ID) 1350
Total energy: -101175.0 ( -55.11 by residue)
QMean score : 0.444
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