Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYV-TDDFLTRLTDREQTFPTGLKLDGYGVALPHTDPE-CVTEQFIAVITVKDGIPFKLMEDAGQTVEANLIFVLGLNEP--HSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
1A6J Chain:A ((9-156))
-QLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTGI---GNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDN----QPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDT--
General information:
TITO was launched using:
RESULT:
Template:
1A6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99115 for 1154 contacts (-85.9/contact) +
2D Compatibility (PS) -15582 + (NN) -5055 + (LL) 852
1D Compatibility (HY) -7200 + (ID) 1350
Total energy: -127450.0 ( -110.44 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_1A6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A6J-query.scw
PDB file :
Tito_Scwrl_1A6J.pdb
: