Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQ-KPNNSK
1YD0 Chain:A ((1-89))
MKEKIRKKILL------------APEEPGVYIFKNKG-VPIYIGKAKR-------LSNRLRSYLN-----------PQTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRPKYNV
General information:
TITO was launched using:
RESULT:
Template:
1YD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13162 for 628 contacts (-21.0/contact) +
2D Compatibility (PS) -9532 + (NN) -5523 + (LL) 2016
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -30451.0 ( -48.49 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_1YD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YD0-query.scw
PDB file :
Tito_Scwrl_1YD0.pdb
: