Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTNKLKMRETMIAYAFLAPILLFFLIFVFAPMVMGFVTSFFNYSMTQFTFIGLANYNRMFHDSIFMKSLINTVIIVIGSVPVVVFFSLFVAANTYEK-NVFSRSFYRCVFFLPVVTGSVAVTVVWKWIYDPMSGILNYILKSGHVIEQNISWLGDKHWALLAIIIILLTTSVGQPIILYIAAMGNIDNSLCEAARVDGANEMQVFWQIKWPSLLPTTLYIAVITTINSFQCFALIQLLTSGGPNYSTSTLMYYLYEKAFKLSEYGYANTMGVFLAVMIALISFAQFKILGNDVEY
3D31 Chain:C ((43-283))
-------------------FLLLVLFLFIFLTLSNMIFEQITE---------DFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILA-RFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGS-RGLIGEPLESY------IQFR----DALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAY-YP----MVGPTLIYDRF-ISYGLSASRPIAVLLILVTLSIFLVIR---------
General information:
TITO was launched using:
RESULT:
Template:
3D31.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -225092 for 1853 contacts (-121.5/contact) +
2D Compatibility (PS) -24642 + (NN) -3260 + (LL) 4512
1D Compatibility (HY) -12400 + (ID) 1800
Total energy: -262682.0 ( -141.76 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_3D31.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D31-query.scw
PDB file :
Tito_Scwrl_3D31.pdb
: