Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVPKRVKHRREFRGKM--RGEAKGGKEVSFGEYGLQATTSHWITNRQIEAARIAMTRYMK--RGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVMFEIAGV-SEEVAREALRLASHKLPVKCKFVKREAE
3J7Y Chain:N ((55-195))
-RAPLVPKVRREPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTL
General information:
TITO was launched using:
RESULT:
Template:
3J7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8013 for 932 contacts (-8.6/contact) +
2D Compatibility (PS) -14386 + (NN) -3244 + (LL) 208
1D Compatibility (HY) -3600 + (ID) 2150
Total energy: -31185.0 ( -33.46 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_3J7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J7Y-query.scw
PDB file :
Tito_Scwrl_3J7Y.pdb
: