Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPAEGSRKVRNRVGRGTSSGNGK-TSGRGQKGQKARSGGGVRLGFEGGQTPLFRRMPKRGFSNINA--KEYALVNLDQLN-VFE---------DGTEVTPVVLKEAGIVRAEKSGVKILGNGELTKKLSVKAAKFSKSAEAAITAKGGSIEVI
1VQ8 Chain:L ((3-144))
-----------SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGR------DKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAE--FRVDVRDVVEEA-D--DADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELT
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8027 for 732 contacts (-11.0/contact) +
2D Compatibility (PS) -13073 + (NN) -2275 + (LL) 1228
1D Compatibility (HY) -2400 + (ID) 1600
Total energy: -26147.0 ( -35.72 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: