Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4MKF Chain:B ((1-216))
MNLVLMGLPGAGKGTQGEKIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD-CERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVRKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQMQPLLDFYSEKGYLANVNGEQDIEDVYADVKDLLGGLK
General information:
TITO was launched using:
RESULT:
Template:
4MKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68517 for 1636 contacts (-41.9/contact) +
2D Compatibility (PS) -22855 + (NN) -9862 + (LL) 204
1D Compatibility (HY) -22800 + (ID) 6250
Total energy: -130080.0 ( -79.51 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_4MKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKF-query.scw
PDB file :
Tito_Scwrl_4MKF.pdb
: