Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKLRRFRFPLRFYFTLMFVLTMLFSVLASLLLVAAIVFTFFQGVLTTHVLQVSALAVVFLSLVIASISMWYGSYHLTKPILDISRIVSNVADGDFEGHIYRNSNRRKSYEYYNELDELSESINQMIVSLSHMDHMRKDFI---TNVSHELKTPIAAVANIVELLQDPELDEETQSELLGLVKTESLRLTRLCDTMLQMSRVDNQETIGELSSVRVDEQIRQAMISLTERWQAKRINFQLDSKPYTVYSNSDLLMQVWINLLDNAIKYSDD--------IVDLRVRMEETNNHYLRVIISDKGRGISQYDVQHIFDKFYQADQSHNQQGNGLGLAIVKRIIVLCKGRISVSSQFEIGTEFCVELPLS----- |
| 1GKZ Chain:A ((38-378)) | ------VRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPI----------------------KDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLS-PKKIIEKWVDFARRLCEHKYGNAPRVRINGH-----------------------VAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN-NDVDLIIRISDRGGGIAHKDLDRVMDYHFT---TAPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169394 for 2364 contacts (-71.7/contact) +
2D Compatibility (PS) -31272 + (NN) -8131 + (LL) 4556
1D Compatibility (HY) -8000 + (ID) 2350
Total energy: -214591.0 ( -90.77 by residue)
QMean score : 0.370
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