Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------MKLSKQLYKSLPLLTVVLCVGALQQ-NVEAKAKHYKTTSHVETQYVSTSSKKILPFTHNKQIKVGPLDNLGRATYSHIQLRDADEPKIKRERLTYNPTGWH----NYKFTTEKGKTTWLMDRGHL---VGYQFSG--MNNVPENLVTMTKYLNTGFSE-----NNPDGM-LYYENRLDSWLANHKNFWLDYKVTPIYEGNNL---VPSRVELQYVGIDKQGKLLEIKLGGGKEQ---TDEYGVTTVTLENTSPL---AKIDYKTGMLIKEDGKQAEEGEDPN--SDADENEAAIESASDIEENTNTNTSESDTNNVAPKNRIVYVANKGRSNTYWYSLENIKNANTANIVQMTE--QEALNQHKHHSTTEAQ------ |
4OV4 Chain:A ((23-408)) | PKTIHIQDVTLRDGNQALKRPWTIDEKIEVFDLLVELNVDGIEVGFPSSNETEFHTCQVLSKRA---PKGKPIAALSRANQNEIAVTWEAIQKADCPRMHIVYPVSDFSIKHVLKISEKEVLQKIRNSISFARSIVGPGIEIQFSGEHFGDAIENFAFTKEAFLTAIEAGANIINLPNTVERYRPMVFVNMVKEIKDVVKDKAIISIHTHNDLGMATATSVESVYVGAE----QIEVALNGLGERAGNTNLYETAIALHQNGENLNINFQRIYPTAKRISELTGIPIGEKTPIIGEDIFSHRSGIHQHQSKGAYRTFSPEFVGRMD---KETISFTNQSGHKAIEFLLHQRGIQVSKEGIHHLFSLAKSISSRENNREITEAELVALSQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OV4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 97144 for 2505 contacts (38.8/contact) +
2D Compatibility (PS) -34280 + (NN) -2127 + (LL) 440
1D Compatibility (HY) -2000 + (ID) 2950
Total energy: 56227.0 ( 22.45 by residue)
QMean score : 0.181
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