Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------------------------------------------------------MKIDKKEFLALIASIILLI---FASVT----FF-LFKDHGTTQMDTVESS------VNHV--SDSQLTEAQDMLDKFEKKPSEKLLKDVELALNKLSNSSKKEALQKRFKKAKDKYLKDEADKKATKDATD-LVE-ILEQAPSEENVLK------AEAAVNKLTVKESKEALQKRIDTVKTQYGLIGNQTPSSSV-AETTEQGTANPASQDTSSYVNQNVAPTYEQPQTNNTPVTPGVNNTVPTPGTGTAPATNGTGVAQ----------------------------------------------------------------------------------------- |
| 4N9N Chain:A ((11-438)) | NLNLIDMKLFHHYCTKVWPTITAAKVSGPEIWRDYIPELAFDYPFLMHALLAFSATHLSRTETGLEQYVSSHRLDALRLLREAVLEISENNTDALVASALILIMDSLANASVDNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVIT--KDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRT-GTWDAYVDSMSPSAWIFHVKGAATILTAVWPLSERSKFHNIISVDLSDLGDVIN--PDVGTITELVCFDESIADLYPVGLDSPYLITLAYLDKLHREKNQGDFILRVFTFPALLDKTFLALLMTGDLGAMRIMRSYYKLLRGFATEVKDKVWFLEGVTQVLPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4N9N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 59641 for 1360 contacts (43.9/contact) +
2D Compatibility (PS) -24725 + (NN) -20111 + (LL) 564
1D Compatibility (HY) -3200 + (ID) 2150
Total energy: 10019.0 ( 7.37 by residue)
QMean score : 0.270
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