Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MAKTKKI----PLRKSVVSGEVIDKRD-------LLRIVKNKEGQV----FIDPTGKQNGRGAYIKLDNDEAILAKKKRVFDRSFSMEVSDEFYDELLAYVDHKVKRRELGLE-----
3LFK Chain:A ((2-123))
SHMSAMAESKVLVKGTPFNKPVIKGKLENNYDMSQDEVSLLLFLKTHGGKIPLYRIKNETGLKDPESVLKNLMDYGFALEDKER-LGEKIVLTSEGEFVAQAIRVRDEELRLKEMKQKKNVNR
General information:
TITO was launched using:
RESULT:
Template:
3LFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11549 for 573 contacts (20.2/contact) +
2D Compatibility (PS) -9858 + (NN) -2850 + (LL) 192
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: -8467.0 ( -14.78 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_3LFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LFK-query.scw
PDB file :
Tito_Scwrl_3LFK.pdb
: