Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEALKSGIEDILVVTGKSKRSIEDHFDSNFELEYNLKEKGKNELLKLVDETTG-IRLHFIRQSHPRGLGDAVLQAKAFVGNEPFV--VMLGDDLMDITNNKVIPLTKQLINDFEATHASTIAVMEVPHEDVSAYGVIAPQGEGVNG-LYSVNTFVEKPSPEEAPSNLAIIGRYLLTPEIFNILETQKPGAGNEIQLTDAIDTL-NKTQRVFARKFTGDRYDVGDKFGFMKTSIDYALQHP----QVKDDLKKYIIDLGKSLEKTSKK |
| 2PA4 Chain:D ((12-299)) | --VKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER---DQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDL--VLPTGVMERMAQVRAEF---GGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPVYGAQLKDAIKQILAEHEAAERI---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2PA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -152308 for 2258 contacts (-67.5/contact) +
2D Compatibility (PS) -30346 + (NN) -18802 + (LL) 648
1D Compatibility (HY) -20000 + (ID) 5500
Total energy: -226308.0 ( -100.22 by residue)
QMean score : 0.478
|
|
|