Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKDRQIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQGR---DVTFEEY----LVHILKHFEQNQDSIATLLLSD-D--PYFLLRFRSELEHD-VYPRLREEYITKVDIPEDFLKQFLLSSFIETLKWWLHQRQKMTVEDLLKYYLTMVER
2QIB Chain:A ((9-186))
----MGVEERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDLADRFVEPRQGPLGARLLRVMGRYFDFVDEHGPGFSALMRGGPAVGSTTTNALVDSVRQAAYVQILSHLDVTEPPARLELVVRSWISLAESTALLWLDG-RRIPRAELETQLVHDFAA
General information:
TITO was launched using:
RESULT:
Template:
2QIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89631 for 1120 contacts (-80.0/contact) +
2D Compatibility (PS) -17975 + (NN) -11902 + (LL) 488
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -125370.0 ( -111.94 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2QIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QIB-query.scw
PDB file :
Tito_Scwrl_2QIB.pdb
: