Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSDKKTFEENLQELETIVS---RLETGDVALEDAIAEFQKGMLISKEL--QRTLKEAEETLVKVMQADGTEVEMDT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
4U1D Chain:A ((9-496)) | FRPENAIKRADELISVGEKQAALQSLHDFITARRIRWATPSTVEPVVFKFLEIGVELKKGKLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESKIASEQTRADELQKQEIDAITSWLRFTWESYRAVLDLLRNNALLEITYSGVVKKTMHFCLKYQRKNEFKRLAEMLRQHLDAANYQQSKSGNNLVDLSDADTLQRYLDQRFQQVDVSVKLELWHEAYR-SIEDVFHLMKISKRAPKPSTLANYYENLVKVFFVSGDPLLHTTAWKKFYKLYSTNPRATEEEFKTYSSTIFLSAISTQLDEIPSIGYDPHLRMYRLLNLDAKPTRKEMLQSIIEDESIYGKVDEELKELYDIIEVNFDVDTVKQQLENLLVKLSSKTYFSQYIAPLRDVIMRRVFVAASQKFTTVSQSELYKLATLPAPLDLSAWDIEKSLLQAAVEDYVSITIDHESAKVTFAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1504 for 399 contacts (-3.8/contact) +
2D Compatibility (PS) -7897 + (NN) -6131 + (LL) -76
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -20708.0 ( -51.90 by residue)
QMean score : 0.706
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