Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPDMAKDDEHSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFEFDEKLNLVS-EYYLGK
1QHF Chain:B ((2-228))
--KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLDP
General information:
TITO was launched using:
RESULT:
Template:
1QHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56050 for 1880 contacts (-29.8/contact) +
2D Compatibility (PS) -24185 + (NN) -5860 + (LL) 400
1D Compatibility (HY) -21600 + (ID) 5850
Total energy: -113145.0 ( -60.18 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1QHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QHF-query.scw
PDB file :
Tito_Scwrl_1QHF.pdb
: