Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIEVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
2HVD Chain:B ((5-135))
-ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI-----QVGRNIIHGSDSVESAEKEIGLWFHP
General information:
TITO was launched using:
RESULT:
Template:
2HVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64511 for 1004 contacts (-64.3/contact) +
2D Compatibility (PS) -13900 + (NN) -4332 + (LL) -36
1D Compatibility (HY) -13600 + (ID) 3650
Total energy: -100029.0 ( -99.63 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2HVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVD-query.scw
PDB file :
Tito_Scwrl_2HVD.pdb
: