Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
3CJS Chain:B ((2-72))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP--------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3CJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45394 for 495 contacts (-91.7/contact) +
2D Compatibility (PS) -8081 + (NN) -6896 + (LL) 5320
1D Compatibility (HY) -6800 + (ID) 2400
Total energy: -64251.0 ( -129.80 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_3CJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJS-query.scw
PDB file :
Tito_Scwrl_3CJS.pdb
: