Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKWLVIVSCFVAFLGLGACANKQDQAKNEKLKVVVTNSILADITKNIAGNKIDLHSIVPVGKDPHEYEPLPADVEKTTQADLVFYNGINLETGGNAWFTKLIKNAKKKDNKD-YFAVSDGVDVIYL-NGQSGKGKEDPHAWLNLENGIIYSKNIAKQLIAKDPKNKATYEKNRDAYVAKLEKLDKEAKSKFNAIPANKKLIVTSEGCFKYFSKAYGVPSAYIWEINTEEEGTPDQITSLVKKLKQVRPSALFVESSVDKRPMKSVSRESGIPIYAEIFTDSIAKKGQKGDSYYAMMKWNLDKIAEGLAK |
4OXR Chain:B ((8-284)) | ------------------------------KLKIVTTNSILYDMTKNITGDKAEIHSIVPVGQDPHEYEIKPKDVQALTDADVIIYNGFNLESG-NGWFEKALKQANKSIKDDSVIQASKNVKPIYLKQGEKSEHNIDPHAWLSLGNGIEYVKTIKSALENADKTHAKDYDKQGTEYLSKLEKLNKESKDKFNDIPKEKRVMITSEGAFKYFAQQFDVKPGYIWEINTENQGTPEQMKQAVDFVKENHIKNLLLETSVSDKSMKSLGEETGAKIYGTVYTDSIGKKGSDGDSYYKMMESNIKTIHESMQ- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OXR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73179 for 2335 contacts (-31.3/contact) +
2D Compatibility (PS) -30235 + (NN) -16350 + (LL) 2588
1D Compatibility (HY) -24800 + (ID) 6950
Total energy: -148926.0 ( -63.78 by residue)
QMean score : 0.567
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