Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKDLLQLVVKAADEK-RAEDIVILDLQPVTSV--ADYFVIMSASNSRQLEAIADNIREQVKGNGGDASHLEGDSKAGWVLLDLNSVVVHIFSEDERQHYNLEKLWHEAPLLDAEDFMTE
2WP4 Chain:A ((68-127))
-----TLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2WP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22353 for 337 contacts (-66.3/contact) +
2D Compatibility (PS) -6400 + (NN) -3076 + (LL) 2988
1D Compatibility (HY) -400 + (ID) 400
Total energy: -29641.0 ( -87.96 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_2WP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WP4-query.scw
PDB file :
Tito_Scwrl_2WP4.pdb
: