Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSKNPDNYMFLMHKISLTTNSGSLTLSGTNGPIIWEPCLDKPTDENNRFNLEKNEFSELKIFEITEEVEETYNDMMKLSWVEAISKSVIDFTNNIE-AEKVDLREQQYLISAIEAWRALSRELGQSNTIQPYKKTAIKMEDLI |
4GMF Chain:A ((7-357)) | KQRVLIVGAKFGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWINTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVAILRDPPGLTRSAA-------------PLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 20735 for 633 contacts (32.8/contact) +
2D Compatibility (PS) -13692 + (NN) -3354 + (LL) 1544
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: 1433.0 ( 2.26 by residue)
QMean score : 0.177
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