Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAVLILGGAGYIGSHMVDQLITQGKEKVIVVDNLVTGHRQAV-------HSDAIFYEGDLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDIKNIVFSSTAATYGIPEQVPILETAPQ-NPINPYGESKLMMETIMKWADQAYGIKFVAL-RYFNVAGDKPDGSIGEDHKP-ETHLLPIILQVAQGVRDKIMIFGDDYNTPDGTNVRDYVHPFDLADAHILAVDYLRQGNESNVFNLGSSTGFSNLQMLEAARRITGKEIPAQKAARRPGDPDTLIASSEKARQILGWEPKFDNIDKIISSAWAWHSSHPNGYED
2UDP Chain:B ((1-338))MRVLVTGGSGYIGSHTCVQLLQNGHD-VIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHA-IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT-RTLDEMAQDTWHWQSRHPQGYPD


General information:
TITO was launched using:
RESULT:

Template: 2UDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156141 for 2920 contacts (-53.5/contact) +
2D Compatibility (PS) -35819 + (NN) -21312 + (LL) 120
1D Compatibility (HY) -27200 + (ID) 6750
Total energy: -247102.0 ( -84.62 by residue)
QMean score : 0.536

(partial model without unconserved sides chains):
PDB file : Tito_2UDP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2UDP-query.scw
PDB file : Tito_Scwrl_2UDP.pdb: