Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYD-FIYAAIGWHPVDAIDMT----EEDLAWIKELSA--HEKVVAIGEMGLDYHWDKS----PKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
2Y1H Chain:A ((5-266))
GLVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPVQ-----RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQG--AEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRS--GQKQKLVKQLPLTSICLETDSPALGPEK--QVRNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLFPKL
General information:
TITO was launched using:
RESULT:
Template:
2Y1H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146130 for 2186 contacts (-66.8/contact) +
2D Compatibility (PS) -26634 + (NN) -15694 + (LL) 1076
1D Compatibility (HY) -19600 + (ID) 4200
Total energy: -211182.0 ( -96.61 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2Y1H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y1H-query.scw
PDB file :
Tito_Scwrl_2Y1H.pdb
: