Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKVYVEGMEFYGYHGVFTEENKLGQRFKVDLTAELDLSKAGQTDDLEQTINYAELYHVCKDIVEGEPVKLVETLAERIAGTVLGKFQPVQQCTVKVIKPDPPIPGHYKSVAIEITRKKS
2NM2 Chain:B ((3-120))
-DTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVREN-
General information:
TITO was launched using:
RESULT:
Template:
2NM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61465 for 869 contacts (-70.7/contact) +
2D Compatibility (PS) -12801 + (NN) -7638 + (LL) 180
1D Compatibility (HY) -12800 + (ID) 2800
Total energy: -97324.0 ( -112.00 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2NM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NM2-query.scw
PDB file :
Tito_Scwrl_2NM2.pdb
: