Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQNNKGKFNKEQFCQLEDEQVIEKVHVGDSDALDYLITKYRNFVRAKARSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIITAIKTATRQKHIPLNSYASLDKPIFDEESDRTLLDVISGAKTLNPEEMIINQEEFDDIEMKMGELLSDLERKVLVL-YLDGRSYQEISDELNRHVKSIDNALQRVKRKLEKYLEIREISL
4CXF Chain:A ((5-188))
-----------------DADRILAAQAASGNQRAFGQLVARHGVALAQAARSFGIPETDVDDVVQDTFVAAWHALDDFDPD--RPFRAWLFRIGLNKMRDLYRFRR------------------------------------------AARLELARVASTL-GKLDTGSREVIVLTAIVGMSQPEAAAVLGLSVKAVEGRIGRARAKLSALLDAD----
General information:
TITO was launched using:
RESULT:
Template:
4CXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50182 for 1131 contacts (-44.4/contact) +
2D Compatibility (PS) -16325 + (NN) -6023 + (LL) 3908
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: -75422.0 ( -66.69 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4CXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CXF-query.scw
PDB file :
Tito_Scwrl_4CXF.pdb
: