Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------MKKSKGSIESEISKSITQWEKDYLGRGSVSVKTD----------ILRDMIIVNLKGILTPAEYVVCGSKEGMLSIK------------QTRSELV------ESGIEGLKDIILKITGEKVKSFHTDLSSRTGERVMVFKLCN-DLEKNLEKIL--------
4QMF Chain:B ((7-181))
ESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLD-LVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIKELMIKRELAKR
General information:
TITO was launched using:
RESULT:
Template:
4QMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32245 for 851 contacts (-37.9/contact) +
2D Compatibility (PS) -13165 + (NN) -4756 + (LL) 92
1D Compatibility (HY) -7600 + (ID) 1250
Total energy: -58924.0 ( -69.24 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_4QMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QMF-query.scw
PDB file :
Tito_Scwrl_4QMF.pdb
: