Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQS-QNDFTFPSDTYLLLYFWSMSCPNCHQLTDKVL---QDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLA-IPIVLDQN--YEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
3HCZ Chain:A ((7-142))
--LGKKAPNLY--MTDTTGTYRYLYDV-QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERK-----DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYE--
General information:
TITO was launched using:
RESULT:
Template:
3HCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125665 for 922 contacts (-136.3/contact) +
2D Compatibility (PS) -13124 + (NN) -5184 + (LL) 500
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -151023.0 ( -163.80 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_3HCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HCZ-query.scw
PDB file :
Tito_Scwrl_3HCZ.pdb
: