Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLRTEKEKMAAGELYNSE-DQQLLLERKHARQLIRQYNET-PEDDAVRTKLLKELLGSVGDQVTILPTFRCDYGYHIHIGDHTFVNFDCVILDVCEVRIGCHCLIAPGVHIYTAGHPLDPIERKSGKEFGKPVTIGDQVWIGGRAVINPGVTIGDNAVIASGSVVTKDVPANTVVGGNPARILKQL
3V4E Chain:C ((5-187))---TEKEKMLAEKWYDANFDQYLINERARAKDICFELNHTRPSATNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKI


General information:
TITO was launched using:
RESULT:

Template: 3V4E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 954 -15342 -16.08 -84.76
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain C : 0.85

3D Compatibility (PKB) : -16.08
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.662

(partial model without unconserved sides chains):
PDB file : Tito_3V4E.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3V4E-query.scw
PDB file : Tito_Scwrl_3V4E.pdb: