Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEHQSLPAPEASTEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDPVWAKKFTDARVPIVGDDIKSQVGATITHRVLAKLFEDRGVQLDRTMQLNVGGNMDFLNMLERERLESKKISKTQAVTSNLKR-----EF--KTKDVHIGPSDHVGWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRG----------------IGGPVIPASAYLMKSPPEQL------PDDIARAQLEEFIIG |
| 1P1J Chain:A ((260-516)) | -----------------------------------------------------------------------------------------------------------------------------TMENLLQSIKNDHEEI----------APSTIFAAASILEGVPYINGSPQNTF-VPGLVQLAEHEGTFIAGDDL--KSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFL-SYWLKAPLTRPGFHPVNGLNKQRTALENFLRL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1P1J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7884 for 1714 contacts (-4.6/contact) +
2D Compatibility (PS) -24253 + (NN) -3808 + (LL) 8124
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -36971.0 ( -21.57 by residue)
QMean score : 0.341
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