Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSFDVVFVGHR-RGEVRSDNAMLGLLCDAAFDEL---TRPDVVIFPGGIGTR-TLIHDQTVLDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLFNSLGARYV-PQRVVEHLPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL
2RK3 Chain:A ((30-188))
--GIKVTVAGLAGKDPVQCS-RDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEK--DGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101299 for 1170 contacts (-86.6/contact) +
2D Compatibility (PS) -16695 + (NN) -7470 + (LL) 1932
1D Compatibility (HY) -4000 + (ID) 1750
Total energy: -129282.0 ( -110.50 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2RK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RK3-query.scw
PDB file :
Tito_Scwrl_2RK3.pdb
: