Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVVDAAAVVDALAGKGASAIVLRGLLKE-SISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQL--R-----HNVTFYDALYVALATALDVPLLTGD-SRLAAAPGLPCEIKLVR
1V96 Chain:A ((5-125))
-PDITFDSLALIKM---HSQNMKRILEVTLAKFTVNLSIVTVYRYLTAR--LKKN----I---EAEFEILKD-IYNIVPLLDDIAIKAAQIEANLIKKEITLDMEDIITATTAIYTNSLLVTDDPKRYEPIRR---------
General information:
TITO was launched using:
RESULT:
Template:
1V96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50332 for 768 contacts (-65.5/contact) +
2D Compatibility (PS) -12365 + (NN) -7851 + (LL) 2236
1D Compatibility (HY) -400 + (ID) 800
Total energy: -69512.0 ( -90.51 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_1V96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V96-query.scw
PDB file :
Tito_Scwrl_1V96.pdb
: