Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------MRYLPVSTRRIWVNPLCHFSFTVISGALFVSARR--YDSNMLANSREELVEVF--DALDADLDRL--DEVSFEVLSTPERLRSLERLECLARRLPAAQHTLINQLDT--QASEEELGGTLCC------------ALANRLRITKPEAGRRSAEAKP-----
4QMF Chain:B ((7-181))
ESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARD-LIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIKELMIKRELAKR
General information:
TITO was launched using:
RESULT:
Template:
4QMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44419 for 852 contacts (-52.1/contact) +
2D Compatibility (PS) -14748 + (NN) -6089 + (LL) 104
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -71702.0 ( -84.16 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_4QMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QMF-query.scw
PDB file :
Tito_Scwrl_4QMF.pdb
: