Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSARCQITGRTVGFGKAVSHSHRRTRRRWPPNIQLKAYYLPSEDRRIKVRVSAQGIKVI--DRDGHRGRRRAARAGSAPAHFARQAGSS-LRTAAIL----
4KV2 Chain:A ((20-109))
MATTRVTILT-----------GRRMTDLVLPAAVPMETY-IDDTVAVLSEVLEDTPADVLGGFDFTAQGVWAFARPGSPPLKLDQSLDDAGVVDGSLLTLVS
General information:
TITO was launched using:
RESULT:
Template:
4KV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2358 for 501 contacts (4.7/contact) +
2D Compatibility (PS) -8380 + (NN) -892 + (LL) 640
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -11774.0 ( -23.50 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_4KV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KV2-query.scw
PDB file :
Tito_Scwrl_4KV2.pdb
: