Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAERAGHQWCLFLDRDGVINRQVVGDYVRNWRQFEWLPGAARALKKLRAWAPYIVVVTNQQGVGAGLMSAVDVMVIHRHLQMQLASDGVLIDGFQVCPHHR----S---QRCGCRKPRPGLVLDWLGRHPDSEPLLSIVVGDSLSDLELAHNVAAAA-GACASVQIGGASSGGVADASFDSLWEFAVAVGHARGERG
2GMW Chain:A ((24-205))
-------SVPAIFLDRDGTINVDH--GYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLH-IDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKK------
General information:
TITO was launched using:
RESULT:
Template:
2GMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126858 for 1451 contacts (-87.4/contact) +
2D Compatibility (PS) -18712 + (NN) -8253 + (LL) 768
1D Compatibility (HY) -9200 + (ID) 2650
Total energy: -164905.0 ( -113.65 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_2GMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMW-query.scw
PDB file :
Tito_Scwrl_2GMW.pdb
: