Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWLLSNDNARTARLTRLFAT-IVRHQHLAGGGVEVARGAAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALDVMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAEHCPAYLE--STKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
3FNC Chain:A ((4-146))
MDFHIRKATNSDAEAIQHVATTSWHHT--YQDLIPSDV-QDDFLKRFYNVETLHN-RISATPFAVLEQADKVIGFANFIEL----------------------------------------EKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHV-PLPMFVNVEKGNETAIHFYKAKGFVQVEEFT----------------
General information:
TITO was launched using:
RESULT:
Template:
3FNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40015 for 985 contacts (-40.6/contact) +
2D Compatibility (PS) -14218 + (NN) -1911 + (LL) 4628
1D Compatibility (HY) -8000 + (ID) 1300
Total energy: -60816.0 ( -61.74 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_3FNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNC-query.scw
PDB file :
Tito_Scwrl_3FNC.pdb
: