Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTG-PSARELAQTRTVQQVRDLARDRGR----QMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP-PLDDLVGDDLVPYRTLVTQAPV-GVMVGHLQVPGLTGSEPASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKE-VPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 4GVI Chain:B ((57-292)) | ---------------------------------------------------------------------------------------------------------------------LVVAVDQEGGRVQRFRE--GFTRLPAAQSFFALHGLEEGGRLAQEAGWLMASEMIAMDIDISFAPVLDVGHIS--AAIGERSYHADPAKALAMATRFIDGMHDAGMKTTGKHFPGHGAVT---HKETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRAID-PRPASGSPYWLKTVLRQELG-----FDGVIFSNDLS-----MGSY--AERAQASLDAGCDMILVCNNRKGAVSVLDNL--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -76772 for 1834 contacts (-41.9/contact) +
2D Compatibility (PS) -23832 + (NN) -15035 + (LL) 8220
1D Compatibility (HY) -14000 + (ID) 4150
Total energy: -125569.0 ( -68.47 by residue)
QMean score : 0.380
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