Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVTGGVRSGKSTHAEALLGDAA--DVVYVAPGRPAAGSD-PDWDARVALH-RARRPPTWLTVET-ADVATALSEARSPVLVDC--LGTWLTAIMDG-EALWSAATADVYAVLEARLDGLCAALTGLP-TAIVVTNEVGLGVVPSHSSGVLFRDLLGTINRR-----------VAAVCDEVHLVIAGRVLKL
3GD7 Chain:A ((49-232))
-RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQID-GVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG-GCVLSHGHKQLMCLARSV--LSKAKILLLDEPSAHLDPVT--YQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVR--
General information:
TITO was launched using:
RESULT:
Template:
3GD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75672 for 1050 contacts (-72.1/contact) +
2D Compatibility (PS) -17222 + (NN) 1339 + (LL) 340
1D Compatibility (HY) -4400 + (ID) 1450
Total energy: -97065.0 ( -92.44 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_3GD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GD7-query.scw
PDB file :
Tito_Scwrl_3GD7.pdb
: