Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFT--------ETDWEHTL-GGMHALIWH-HGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMR---GAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW
3LD2 Chain:A ((34-192))
----SMKISPMLLSDI-----EQVVELENKTWSEQNTPVPLPVASKDQIIQKFESNTHFLVAKIKDKIVGVLDYSSLYPFP---SGQHIVTFGIAVAEKERRKGIGRALVQIFLNEVKSDYQKVLIHVLSSNQEAVLFYKKLGFDLEARLTKQFFLKGQY--VDD--LIYSYDLE-------------------
General information:
TITO was launched using:
RESULT:
Template:
3LD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93937 for 1004 contacts (-93.6/contact) +
2D Compatibility (PS) -15538 + (NN) -2184 + (LL) 1740
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -116569.0 ( -116.10 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_3LD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD2-query.scw
PDB file :
Tito_Scwrl_3LD2.pdb
: