Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDQRWLIDKSALVRL-TDSPDMEIWSNRIERGLVHITGVTRLEVGFSAECGEIARREFREPPLSAMPVEYLTPRIEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSGLTVLHVDKDFDAIAALTGQKTERLTHRPPSA
2LCQ Chain:A ((9-121))
-LKKTLVLDSSVFIQGID--------------IEGYTTPSVVEEIKDRESKI-F---LESLISAGKVKIAEPSKESIDRIIQVAKE---TGEVNELSKADIEVLALAYELKGEIFSDDYNVQNIASLLGLRFRTL-------
General information:
TITO was launched using:
RESULT:
Template:
2LCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32866 for 876 contacts (-37.5/contact) +
2D Compatibility (PS) -12386 + (NN) -2006 + (LL) 1684
1D Compatibility (HY) 0 + (ID) 900
Total energy: -46474.0 ( -53.05 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2LCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LCQ-query.scw
PDB file :
Tito_Scwrl_2LCQ.pdb
: