Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
4DR8 Chain:B ((24-185))
--------LGDRVLRQPAKRVSRIDD-----ELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPL--VLINPKIE-----RTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELN--EALDKKGFAVQAV-------------
General information:
TITO was launched using:
RESULT:
Template:
4DR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72672 for 1207 contacts (-60.2/contact) +
2D Compatibility (PS) -17056 + (NN) -1225 + (LL) 1080
1D Compatibility (HY) -14000 + (ID) 3000
Total energy: -106873.0 ( -88.54 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_4DR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR8-query.scw
PDB file :
Tito_Scwrl_4DR8.pdb
: